NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334792_007312

Scaffold Ga0334792_007312


Overview

Basic Information
Taxon OID3300033888 Open in IMG/M
Scaffold IDGa0334792_007312 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4699
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002814Metagenome / Metatranscriptome528Y
F003479Metagenome / Metatranscriptome484Y

Sequences

Protein IDFamilyRBSSequence
Ga0334792_007312_3330_3767F002814AGGAGMTKVRLVTLLVVIAHWVVAVLHLFLAVKVLPAPNNNVSWLAITLITLGHLGVFIALWKLSDKLTGFVSSIFFLAALGADLYEHFLHASANNVFTVAPGDWTPPFDASVFILLALEILGCLLGILLLGRRTRNNSQRPFASHSVLS
Ga0334792_007312_3910_4698F003479N/AELYKAATGAQQNVQYALTSLEKEALRNRLALIEQASKSLDALMDKTAKMVEAQDATRLMLFSLQTTKIKLDADRADTQSKITALYIPQLSDKPLKELVAEKQNSEGSEQRALDRISRQNNWDVALSVGVHQQVNPVAFGAQPYGAVSVNYNFASRAIDKHLDRAVEAHDEWKKTQESDVVRSMEVLRQQLVESMSVQEAKLKSLQEERSQIGRNLQLVSNPDTSAAFDFHNQLTAAQLLLEIETGDASFRIDLLREYLAKNY
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