Scaffold Ga0334792_002130

Overview

Basic Information

• Taxon OID: 3300033888
• Scaffold ID: Ga0334792_002130
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10842
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045495	Metagenome	152	Y
F097000	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334792_002130_10005_10463	F045495	AGGAG	MKRKFTISAVLLSAAFGLSLYPSVGYAQTSHRSALTVKVPFEFAVGNQTFPAGTYQFQSLLNSVPSKATIDVLVVRSTEGRLYRAMVTDVVGSEEPNNARLVFTRSDGRAFLSEVWEPGKQAGCRLQGHKDHTQTAESENDKVTLIASTDRR
Ga0334792_002130_9538_9762	F097000	AGGAG	MQIEQINLRDKLDRARLSFDTQLAEVLVGRPDVGYAQIEEEFGISEKVIRRVMKQFNIGARKRGPKPKQQGPNV