NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_152304

Scaffold Ga0334790_152304


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_152304 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)694
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010179Metagenome / Metatranscriptome307Y
F021614Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_152304_260_421F010179AGAAGGMDAAMTDTTTLSSLPEPVARMMAVEILLAAPESLGDDVLESCLYILREKLRAA
Ga0334790_152304_418_693F021614AGAAGMSTHVEGATVLILVTAHATLDAGPAHLSLAALEGPAPGTWRYNLGEGTNNRAQYGRVAGMTDHLEVLRYAAGVCAAGYQPGTIERGLLEQFA

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