NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334790_019834

Scaffold Ga0334790_019834


Overview

Basic Information
Taxon OID3300033887 Open in IMG/M
Scaffold IDGa0334790_019834 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3059
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017806Metagenome238Y
F076790Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0334790_019834_2623_2802F017806GGAGGMTIPSATQHTYPYHNEPIWSKSEKLIARKAFDAALGQELHEVIQEAKRMANEIQRSSDL
Ga0334790_019834_2801_3034F076790GGAMFQSSVAAFYPLPRCPFYRIGRFHFGGFIIVFLRPPPVCSEIKKIVYWMSEILFATEIAFRCLDGCMPEQELTIKVG

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