Scaffold Ga0334790_000703

Overview

Basic Information

• Taxon OID: 3300033887
• Scaffold ID: Ga0334790_000703
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30723
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0473
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017934	Metagenome / Metatranscriptome	238	Y
F074173	Metagenome	120	Y
F082600	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334790_000703_2028_2249	F017934	AGGA	MTEANNQPQPRELDEAIRKLVLKRAMAINTTLLARLAMVADDLDAGGHRAALGGIDGIERQIDTMRSLLLLLP
Ga0334790_000703_3735_4493	F082600	AGGAG	MTSLRFVWCVTLAALLFPLAACSPRTPEATVEVIDTTLSITPHAEQAALDAVGDQIAHMQRGDHLVLIPVTGDAANDAGGRILRLSAPTQRETYDMDLRRFQEEAQKQFAAWRASFDQHQSRSDILGALDVARQEFALLSKESNRELVVVSDFLEDDGTYRFVSAGELASPARARQLAANLREQHGFTMQGVPLCLGRLESSDFAPLSAKRKKAVQSFWTAYFAAGGEQAEIEFDGTGMLADADRGCFRGKR
Ga0334790_000703_611_940	F074173	AGGAG	MTTDGNAEEMRISGFDSGTKPADSLGFPNDSLGQSYPQHYPQARDALGEPLSIREVARLIGCSAWTVRHCYLPQGIPHLRSGPAGKLIFFRNQVVAWILQQQKQRKGGR