NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334850_006403

Scaffold Ga0334850_006403


Overview

Basic Information
Taxon OID3300033828 Open in IMG/M
Scaffold IDGa0334850_006403 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2309
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3534Long. (o)19.0471Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001317Metagenome / Metatranscriptome724Y
F014797Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0334850_006403_3_227F014797N/ALVVLAAGGSPGPALGAAATDAVARIHRLLRPAEPLGRGRRRLLRLTAASLALTPVLLALAPALLALALGRVPGA
Ga0334850_006403_455_736F001317GGCGGVAQSPPGEPVAAAVQLAIGLLAAGLDSPELEAWAVQTLIPIDADGLGDFIAGLHVLSEMLLHELHKATGEPSADALKRLALLAEHRPGTSSAS

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