Scaffold Ga0334850_001924

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334850_001924

Scaffold Ga0334850_001924

Overview

Basic Information
Taxon OID	3300033828 Open in IMG/M
Scaffold ID	Ga0334850_001924 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6988
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3534	Long. (^o)	19.0471	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002248	Metagenome / Metatranscriptome	578	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334850_001924_4632_4964	F002248	GAGG	MDRRQQSRVFVDLPVQIWGMDSYSRPFIQPASLRTISGRGATLQCVDARLKPGDVVDVMYEGSKAQFRIVWCGKPGTDMAGEVGVENLSADGRFWDIDLVKCVAAGAGQG

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