Scaffold Ga0334850_000033

Overview

Basic Information

• Taxon OID: 3300033828
• Scaffold ID: Ga0334850_000033
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73228
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (68.18%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0471
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057532	Metagenome / Metatranscriptome	136	Y
F060542	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334850_000033_3393_3752	F060542	AGCAGG	MFIPKMSTDALDEGKWYMMLVEGKTPPRRTGYCAGSCSGHSTEAEANEHFLQYQLDREVDLWLARRGERACAMCGEPTTLRARLGRNTELIVLCRRHQSTISLQTLARRRTPGLAAQEA
Ga0334850_000033_3784_4068	F057532	GAG	MGWRKSGLFHPRQEILVMTCDVCERDIGYEDERRPRAHYEITRLPNPGAMADQHPAAYVCSPECLRAFAAKASTEPDRLPPREGGSAPRGKSSP