Scaffold Ga0334850_000022

Overview

Basic Information

• Taxon OID: 3300033828
• Scaffold ID: Ga0334850_000022
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 82659
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (58.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3534
  • Long. (^o): 19.0471
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058319	Metagenome / Metatranscriptome	135	Y
F066218	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334850_000022_24524_24898	F058319	GGAG	MPELCARLEAAALSLTGPGHIKERLFDAYCRYLHGIDQSDLPAELAAEFGDMIQALHRATALPGDDVVKASVRKLSNDQACHYAELVIRLYGMTAGMSHHVAARNARPVVPLAMYMASEASSNS
Ga0334850_000022_25336_25866	F066218	AGG	MAFFEGDAVAARKADKPRSARARGLRTLQHQTLPPKTRYAIDTEVWFRGLVVEHQPAARHQQRWSTKDQVHDEAIAWFLEQHADRPFEPYPARRAADEDLTFWVDSRLMQRARRMAQRDGVKVARLIDAALSCYVRQHLPEALLQFRQRVQLEAYRLYQGVSPRAGRARRARKAGA