NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334847_002818

Scaffold Ga0334847_002818


Overview

Basic Information
Taxon OID3300033826 Open in IMG/M
Scaffold IDGa0334847_002818 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 714 E2 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1668
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018229Metagenome / Metatranscriptome236Y
F087688Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0334847_002818_1070_1441F018229N/AMCRTPLWGVAGFLGCAYFAWISSVHVTRNEYDWPHDFWTAATYLVWILLLAGLALDTRCLRERVFFGVLVINFVVGCGLTLWYRIPSADVRAARIGTGALWALAALVSLTTLGRAPYSRKNEV
Ga0334847_002818_2_112F087688N/ALLLDIIRNEKKWIKEKEGARDPLATIGEPRKSAINI

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