Scaffold Ga0334840_007250

Overview

Basic Information

• Taxon OID: 3300033824
• Scaffold ID: Ga0334840_007250
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4363
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0471
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004753	Metagenome / Metatranscriptome	425	Y
F010341	Metagenome / Metatranscriptome	305	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334840_007250_3637_3894	F004753	AGG	MDEQTDANEVKPPAPGEMGSDARELIRDWEVLFWAFLLFGVARLAWLYLYRPENKDFHLGLSCGFVFCGALGFLMRWVFSPKRTQ
Ga0334840_007250_3906_4130	F010341	N/A	MTDPFTVKPVYNALSQYIGNRADIGAGKTMRDGVLEPANPFERNATRPPRRWFVLFSLVSALFFGSFNYFNNLL