Scaffold Ga0334840_000419

Overview

Basic Information

• Taxon OID: 3300033824
• Scaffold ID: Ga0334840_000419
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25244
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (55.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0471
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000389	Metagenome / Metatranscriptome	1198	Y
F067928	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334840_000419_23892_24107	F000389	AGGA	MFRFDELIRRDMIVRDVKQSHPETIPVFESLGFRSSCDDCDIETVARKYGISSLDVLAALNQAAFPSNAGQ
Ga0334840_000419_24720_25196	F067928	N/A	VIHQKPLEESRGEKKMTTLKTIMLSVGAVALLGASGLSAQTKATATIPFQFTVQNTTLPAGDYTLSTSSATHDVMTIRNAETRKAVMVLAASAASGYRGTQDKNVVVFHKIADRYFLAEVKTDAVSGRVSPSKLERELTSEGGGQPLAAVIVPALSAR