NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334804_049523

Scaffold Ga0334804_049523


Overview

Basic Information
Taxon OID3300033818 Open in IMG/M
Scaffold IDGa0334804_049523 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1227
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028569Metagenome / Metatranscriptome191Y
F061081Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0334804_049523_175_1227F061081N/ARLRAHESGHEGAARTRAPWLIAPGRSLSVPRLDQVGLRHSSFGSDAAAARFATVLIELGIGSPSDWIACGREPGKFLRRTFDRFVKRHAEPAIDGAFELSVTLSTDPHEWCETEDEPDGSQMFIYMEAASCGFVNLGPALTLCEKKDPRLPVTFARLFLRGLGRLFRIYDDRDAEEHLSFLQDNYDPEEDREALAALPDRKNILPACMIQRPLGRRALNVTLARMGPRNRVLRLLQATLELDRISRRVRFPEVPEPVREMFCDCNPPVPILLAIYRQGDAIETCFDDESQSMLEQTPEPWPLIPFNGTDPKSTKQAFGCLSGALETLAAARRVLDLVPGWEAIRRERLRP
Ga0334804_049523_2_178F028569GGAGMMKTTHFGSNRSYGLSKAILLYSDGQEAFATVHEPKDSPDGGPPYLDAGEPLSVGFLRD
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