Scaffold Ga0334804_001087

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334804_001087

Scaffold Ga0334804_001087

Overview

Basic Information
Taxon OID	3300033818 Open in IMG/M
Scaffold ID	Ga0334804_001087 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16065
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (31.25%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3533	Long. (^o)	19.0475	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102334	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334804_001087_13457_13996	F102334	N/A	VAPAVDGPVVELIGHPTTQPRVDSRTAIEAAVDQAVLPHQLHEIDQIIELAQLGELLVEKDARVALLERGLADWRERARLEIEARAAAERLAFERERDLIGVIHQQISAIESAEESTREAFAQTDELRARLDEQMTLAEDAQQSTQSALARMHELQLRIDELEDRLRERARHWWSRRAV

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