Scaffold Ga0334980_0032186

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0032186
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2237
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010673	Metagenome	300	Y
F090064	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0032186_117_254	F090064	AGGAGG	MKVYWTAFYGRSEYTFQGRNAKRDAYRLVKRFGGRVVREIIKSNE
Ga0334980_0032186_514_1113	F010673	N/A	MNPKLIPILQRIIAHDSVLSSFDADNLPQSALAYVRHNFRMDDSFAPEEQDLLETLPPFADNISESFREGSGGDASVYHLFEDGSLWIETNAYQQVWADARDFAVESILPLMRLDRMDADLLRAIGMDDQVSEVRDDFYSSFAHVLHRDCGIPHCDAREHWNAWSRQAPDSLTESLELGGGESGRAEGLRFASEYSVNA