Scaffold Ga0334980_0027193

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0027193
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2444
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001807	Metagenome / Metatranscriptome	631	Y
F020342	Metagenome / Metatranscriptome	224	Y
F089995	Metagenome / Metatranscriptome	108	Y
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0027193_1395_1598	F103180	N/A	MIGFSIEFKRWYFVLRGPKGRVYLATGFAKRMPVITLTGAYMLDQCIGTWPGDETDEELLDQLKGIR
Ga0334980_0027193_1595_1855	F001807	GGA	MTVLAIEDTQFTDTHVTVTAVVDEMRLLYHATHLDPEEWAPALCTTTVELDPEEPIPLDEDGFCTYLNQLDPQWQLVDTSDYDLDS
Ga0334980_0027193_1855_2040	F020342	N/A	MPAVTDNISMFDRINLASCAQRRASANVLNSTRFEGEYDTARLWMKYRLIKTTTYSYVDD
Ga0334980_0027193_2295_2444	F089995	N/A	MQLVARMKETSDRLGMGFIGGFIAPNGEKFVMTNMDDEDSQALLPDDLR