NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334980_0007717

Scaffold Ga0334980_0007717


Overview

Basic Information
Taxon OID3300033816 Open in IMG/M
Scaffold IDGa0334980_0007717 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4740
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031852Metagenome181Y
F060633Metagenome132N
F085232Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0334980_0007717_2423_2674F031852N/AMTGHFYFSTMEIYLGKQAKSLFYGRDVPINSIGVFQTIGGDWLYWFNDDWTYDTGCADTEVEAMETAKRNFKARKKLNDEETI
Ga0334980_0007717_2658_2819F085232N/AMKKLFKANNEIKRPGDLAPRGVKSTIKGTYGFNEVFEHIFTESRKPDPSWKKN
Ga0334980_0007717_3060_3545F060633GAGMWLEANFKVSFYQPEDLLAGMWFMNSLYPGTDREFVELWLLEEDIIEEEYDNFVAKNGFPVEPMVTLEMGNPDEADLIVAYPPEIGWIHQDDDSIREFDIDDANWIIQNNGGVVHVLIDEQAYDQDGTIYTITEDQEVIMKYRFTDDLYGDDQDWDEYLEE

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