Scaffold Ga0334980_0007717

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0007717
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4740
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031852	Metagenome	181	Y
F060633	Metagenome	132	N
F085232	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0007717_2423_2674	F031852	N/A	MTGHFYFSTMEIYLGKQAKSLFYGRDVPINSIGVFQTIGGDWLYWFNDDWTYDTGCADTEVEAMETAKRNFKARKKLNDEETI
Ga0334980_0007717_2658_2819	F085232	N/A	MKKLFKANNEIKRPGDLAPRGVKSTIKGTYGFNEVFEHIFTESRKPDPSWKKN
Ga0334980_0007717_3060_3545	F060633	GAG	MWLEANFKVSFYQPEDLLAGMWFMNSLYPGTDREFVELWLLEEDIIEEEYDNFVAKNGFPVEPMVTLEMGNPDEADLIVAYPPEIGWIHQDDDSIREFDIDDANWIIQNNGGVVHVLIDEQAYDQDGTIYTITEDQEVIMKYRFTDDLYGDDQDWDEYLEE