Scaffold Ga0334980_0007475

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334980_0007475

Scaffold Ga0334980_0007475

Overview

Basic Information
Taxon OID	3300033816 Open in IMG/M
Scaffold ID	Ga0334980_0007475 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4822
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003748	Metagenome / Metatranscriptome	470	Y
F057983	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0007475_2837_3274	F003748	N/A	MFTVNRKDAGGSYINAEGDYTVTVSKIEETLDAKGREVCKVTFKTEDGASITDRFINQENVWFRVNQLVAATKHNVPDGTEYDFLGVKGSYAAFLKSMTGLELLITARFEEYMVNGETKKTLRIKNMREVPIAEVDGDDLDPKPF
Ga0334980_0007475_364_786	F057983	N/A	MTDQKIEILFASIEKMNKRLGSIEAMMKATTKKISDIEDSFQSDSDDSTWEGFGPKPEKTPINPNAEQHTLELHHGPYTIYRHDGESDKEWQRRKDHLMDQRITFLNGSGQNGTPEQVAYLQRIEERLGRKVFEYPLATT

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