Scaffold Ga0334980_0000325

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0000325
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22332
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (6.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002018	Metagenome / Metatranscriptome	603	Y
F002391	Metagenome / Metatranscriptome	564	Y
F034186	Metagenome	175	N
F035312	Metagenome	172	Y
F089987	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000325_11447_11893	F002018	N/A	MTSYQALINKIEAFYNAHLQVKKVGSDFVEQMPNFATKDEKYPIVFIAPITAIATENTNTMSLEITCLDIIQKDRANITVILSDCHQILVDLVNYFTFSDDYSFDVLGQPAIVPLNNQILDYAAGWVMTLDVDMSNWTDCQVPIITES
Ga0334980_0000325_12568_12834	F002391	N/A	MATDNEILIAKKGTFVLNKTTEKTVNINAIVVLEDTVFDLIKIAGEDVKSTYIATPATAVKAGAIIRPTNAQQFSAVKLASGSVILVL
Ga0334980_0000325_13700_14146	F089987	N/A	MARYANNGIFNVKYPTRRKIQVILQKLISESGAIDTGALYDSVRINAKIPALGELEIQIIAMYYFGFLNNGANLWNGGVIPPYEFCAQLTERMDSSGITAEIYSQYTEWMTQRYPILQVAQILGEKKSIIYTFEPIGGDFIGKLDFTD
Ga0334980_0000325_1867_2409	F034186	N/A	MKEHLDRYLSHNYLEVLKYTRHFLDVLNIPTSIDADAVINNAYLHCAGVNAQDMTEDKAKSYLLNTIKCDLIWTQGSKTKKQDLYRSQEYTMDVIDDPTDLEHKIEIEDRYNFKKALVEIYRTEQKDRIKKIVFEAYYDKGHSTQTALAKYFNINSTSAYFLIKEIKENINQIQYRYEEC
Ga0334980_0000325_20243_20530	F035312	N/A	MGFNEVAFTVITILISGIGYFLKSLHSDLRSVMKEQKQIIETQGRLKGKIELVDNEARFKYEAIEKMTQLEIKHLAEQISELTQSVKKLIEINLK