Scaffold Ga0334980_0000239

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0000239
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26114
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F018511	Metagenome / Metatranscriptome	234	N
F021732	Metagenome / Metatranscriptome	217	Y
F031407	Metagenome / Metatranscriptome	182	N
F034112	Metagenome / Metatranscriptome	175	N
F052398	Metagenome	142	N
F060725	Metagenome	132	N
F064518	Metagenome	128	N
F073276	Metagenome / Metatranscriptome	120	N
F090088	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000239_14137_14433	F031407	N/A	MTDKEKALIIIDLIEKITQEIIDKPMQRKRLLQMRGHLEKAVKLTGNGIKREWSRPPSLPIVSHAKAEPIPFIPTTTETNGDLLADNIPVITKKARKR
Ga0334980_0000239_14433_15314	F034112	AGGA	MVIFNIGNKQIKYNYPETAEDITLEQYIYFAKFLLPEHPKTELEAIQYMNDRDALYKKILPYAKKLKVKVTGFEQLYVILKLEYTLEREEVKDNVRRFLPPLISQWRSNDEQLTQRLEIMDEVWEAKERYPYMAKVVNYFTGIPLDACFGKVADSLELKYLVYIYGKIMNAINTPAETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPQGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSEKYTLDLQTSMLQRAMENLN
Ga0334980_0000239_15380_15511	F064518	GGAG	LFNLTGFTPMESAEKAKLYQVFQYLASKAAEEKVIDDISKSKK
Ga0334980_0000239_15508_15963	F073276	N/A	MSLLQLANIFEAATDAVNGLNGFSFGWASDRVRSQIYTEEGENNTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYDENGDVDTTLQITKWSNLIAFAEKFILELGTTKTTNSIPDQVNLVLDSFTSIQRLITVQATFSISIKSEC
Ga0334980_0000239_1578_2312	F052398	N/A	MNLPAIAMTIEEKIQDIQLVIDNREKRLFKTGIVESLPKINQVVKQILPLYGIDASPEHLVEVTQFITTYKLIAVDEIKLAFEKFARQELNIDEHKLYGKVDLAAIGRILTAYITWRQKVYFTVDMEDEKKRGKMEEEQRQIEAKRKFYAEFPEMLSGFKGKSYEDVPFYWYDAAMEAGLIGYAEGEKRAIWEEAQDIASKQKIQADSYIDFKTQLHRAAEESKKRAVIIAQKLAVWRIVLNKK
Ga0334980_0000239_17689_20112	F060725	N/A	MIKLFIGGQEVDLNQNEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFVASNFKVSLIGNNADWFADVGNTLVRDLGWDDIEINTANVKTNYDPLTSEHCYILMKWKAWENETFIVNNEMTPAIFVWQVLEKAFLNRGYQLNSIFKTDPFNRLIIPMGLELGADYLNDFVNLRASSPSPSLLSNSNPSPILITFTDETTSPNFDTGGNYASGVYTVPITATYTLKAELNIATSTIIPTPTDEVLVGWEINGVFEEGEDLGQETDFDDSVIIEFITDLVEGDLVRFVVKHNNAGFIMGLNGSIEIIGSKAIFETGRTFDLQYVIPISWYVRDVIADLTTIFNLAWETNVLSKQVYAYPKDDYTLRYRADATGAISLTTFEGFFKGSDKYDLNTRDVEGSDFQILDGYKSSQVLAYSTDDDTTNKEEERRGVNIYSGGYNFPTDRFDNGVEFIYTKFFAKTIHISDVDITSGGIYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRNGLDGYIRLYDDTSSASSAFDFPAAFMVNYNDPSGGDFNLSFSDEVTNYTNVMQGIFKTFHLQTYKRIELGKVYTTFAKLKPKDITQLSFRRKGIIGSSNFIIQSIEYNPKSNSPAKTVLLYDEKPNINDLTKVSNTITLAGSTPQSGTVTGSGSGLVGANGASVNIQLSYTPFINSMTNVLVLPVNSGITQVSNTNANVLVFQNGQKLIPTIQYIIGGSTIGINVDTHYDGANYEVVVNGVTKG
Ga0334980_0000239_185_466	F014956	N/A	MQSIHGSKMNIHEFVINVTTTVCPSHIVEPIHLRKWWRQRGVGELEKYFVSGKAIHYNEEIDWKKISDHKKSLWYDSQNFQINMGHEYSKRTS
Ga0334980_0000239_20112_20327	F090088	AGG	MEDKEALGKKVFLEFYSNFILDDEIEETGRVFYLAQKASMIHLKLIRGILQNDEYIINMAYIKDVINKIKI
Ga0334980_0000239_23591_23842	F018511	N/A	MKGNSIWGELAARIPEEYKTQVMATVDRTYRVLSIDPSDMDYLFQIYNNFVNNYEPERRNCPACRTKVVGKMRQIVQFWRDEQ
Ga0334980_0000239_835_1089	F021732	N/A	MSITKYTVKCCLDKKLGHFVHVIFSSGFGLYGQTKPYSPDDNIEVEGWTFEPHDLDLQLYPNINRFNLMPLVDENEMDWVIIKN