Scaffold Ga0334980_0000106

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0000106
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39941
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (50.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010762	Metagenome	299	Y
F015082	Metagenome / Metatranscriptome	257	Y
F021761	Metagenome / Metatranscriptome	217	Y
F076034	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000106_11829_11966	F021761	GAG	MVTNPWVNRITALVTLAAIYAAGYAGGRDAATMAHQQQQHACQIK
Ga0334980_0000106_11963_12163	F015082	N/A	MTDSDIFWTLATACQYGGSFYQALGQAGMKADPGNKQRILDAFPEMVATYGTASRLHQGLRSGAMV
Ga0334980_0000106_14221_14373	F010762	AGGAGG	MNEATIKAAFEEWWRDSYGVPPGTHAVMTHVAFAAYLLTLLELMQPESNQ
Ga0334980_0000106_6637_6840	F076034	N/A	LINIPAKQSPVINRLHDCMTQALAYAAAIRDNAQDDGVPIPVELVASFEDDYNNIIAALHEAHHLAG