Scaffold Ga0334980

Basic Information
Taxon OID	3300033816 Open in IMG/M
Scaffold ID	Ga0334980_0000100 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033816 Open in IMG/M

Scaffold ID

Ga0334980_0000100 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41419
Total Scaffold Genes	76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (61.84%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

41419

Total Scaffold Genes

76 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

47 (61.84%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010764	Metagenome / Metatranscriptome	299	Y
F030059	Metagenome / Metatranscriptome	186	Y
F037700	Metagenome / Metatranscriptome	167	Y
F047662	Metagenome / Metatranscriptome	149	Y
F058114	Metagenome / Metatranscriptome	135	Y
F077968	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000100_1265_1438	F047662	AGGAG	MHYETDIIIHQYSSDGDFYYKLKVTDVMNMDYYYEGSALTLDDVMECIQLHLKQHQN
Ga0334980_0000100_3641_3931	F030059	N/A	MNETLNKNLTLIQEVATKALEELKNSTERFGGVNYADLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDLQDYMLEYLKDNLPNNLGWRIYVELDW
Ga0334980_0000100_4378_4596	F037700	GGA	MKKYRIKKETYNDTTKYFPQEKFLYSWYNIFAYEVYFDGGYDTLEEARKRLCEYCREPVVEYLNFDPNEDCK
Ga0334980_0000100_4596_4763	F010764	AGGAG	MIEIQKNYKLTLTEQQAKELYELLRFAKDGSYLTHDKELMLVYHQLQNLFASGIR
Ga0334980_0000100_7811_7990	F077968	GAGG	MTDTWKKWTIWTSIHLFEYCVYSWRNHMWNHLDGYPNETRMRNLFWHYLNYGNTNTYYD
Ga0334980_0000100_8330_8638	F058114	GGAG	MIEITFTREELRHLHEFLLKNHLQVKQSVIDKIDKEVIADEIFELLGDLECLDPTLDEEWQNKLWYDDPEDEYTIAVKRDPKMWNRQTIAELKTLIGKLEAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0334980_0000100

Overview

Ecosystem & Geography

Associated Families

Sequences