Scaffold Ga0334980_0000080

Overview

Basic Information

• Taxon OID: 3300033816
• Scaffold ID: Ga0334980_0000080
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46343
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (49.15%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F035672	Metagenome / Metatranscriptome	171	Y
F042808	Metagenome / Metatranscriptome	157	N
F078232	Metagenome / Metatranscriptome	116	N
F097235	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334980_0000080_12086_14140	F042808	N/A	MGSSVMVAEKNRVVDGLLTSEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWLKGLTFPDVTEVYQNGYYNAAVKKAFTEGFFQGCGTYISDSEKPYLMAAIGGKIFQIDISAGFLVQDLTPIGFQFTVNTRGRVSNVATYVCAAPHGLAAGMVVRLPEPVGASFPEGFFGDFVVDSVPSPTTFTVYNPGVDAGPLLGPLFFGYKMETESPTADHVFFQQAENWLVVQDQQSPPYLYNGGSLRRATGEEVPIGGPMAYGKGRLWVANGSEYYGGDLVYGDPAYGRDSVIRFTENTFLNEGGAFAVSNGPITGLAFGANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLDYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEWGNTPISRQVVRALAYDTEFYLKAASSVNFDNRMLMTIQPQKVNGRGIVHRGLVVMDFDLVSGMGRKLPPAWEGVWTGADILQMVTVRVQKSERCFFFGLNQGKIGLYEVTRTGQFDFDGFDDSPIEWIVETRSLTFAEPANKKRLMSAEQWYDQVMGSIEAKVYFKANEGECWHPWAEIKDCAKYRNCEPGEVSCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRIAMVAQRLQEDIYGDLSRVACPLLSA
Ga0334980_0000080_1713_2012	F097235	GGAG	MLAASHQGKDFTMYGKMMRKRKMDAMNRMGAEVETVEFMPPEGMKLEGESGSAMVDWRMTPNGTVEIVAFDGVTLGGGEMEMEEAEGPEMEMEGMEEEA
Ga0334980_0000080_18048_19139	F034904	N/A	MRKTLAQAKNSTIAQAVGLATCDERFVQLLNEAQARLADMGKWWGTYKKLRICVTAGCITWPREVKTIEAMNVCGYNIPIQNQWYEFQTDERAPRTGCGREGCEQDQLLDRGMVTQYRDSVGSCKFRVYPSLTADAGKRILLQGIDPVTNEEIRTLDTVSGEYVWGEYVTLPNPAITPFVETTNLFKQPGLNGAQKPLTQGRVTIVAYNPTTTISTQVAVWGPSEENPEYRRTYLIGMPEVCGGTSGCNAQAENDCIDHGDGCVPPDEECTNTVVEAIVRLEFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLSLRSLRNELEAYSPNERSVINVQPFGSAKTEFIFGGFI
Ga0334980_0000080_2014_2418	F078232	AGGAGG	MPALTPQELATLGGCFDCMEPGLQQTMLLTLLQQIQAASPGATLSTTSPGGLLTATATAAANPSRRRFVIQNHKAEHLHIKFGTGATASDYHYILQSAATAGVIGSQLTFEGYTGAISVAPVAGSPSYTFAEFV
Ga0334980_0000080_22_1638	F028149	N/A	MATGNVISCKQFASFLVSQEPVYDKEVLKDVRPFDGLIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENSTGDSCVGQPCDPSENKIGWGYTRSTYSLEKQAWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYTPSGISGGAFACKAGLPAISFSWVGAGYTTLRVLDSASAPIVYTTLGLLTPDILRSRVTRQYFLGAIQAGKEGYDSLQLHTDKETFRYLAKSNSQLTDSWRFGEFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFNAVSGTPGNYTLVLPYKNVAASEGIRSEFNGDYDRAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGRPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVNGACPVIIAGCAEDPGNPAQDYNSANGVCNPTLQFTAVANDAGNFVIGTTGILCDGNIVTNAGISEASVAALVVALQAVWDAEFGATSGTWSVVSGNVIQLASSAFPTATEVVPCTNVTLEFAI
Ga0334980_0000080_4379_4567	F035672	GGA	MPHLHDTLRDLGIGVGGPAGGLFIANIVPDPIMANLSVTLGSLAALTVIVKNVIDIWNNRNK