Scaffold Ga0364930_0005257

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0364930_0005257

Scaffold Ga0364930_0005257

Overview

Basic Information
Taxon OID	3300033814 Open in IMG/M
Scaffold ID	Ga0364930_0005257 Open in IMG/M
Source Dataset Name	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4330
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9229	Long. (^o)	-106.9499	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F089773	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0364930_0005257_786_1958	F089773	GGA	LKARADAWVAARVDALVQAALGAYESDGAIPAYGRVLDGIAGTIRQCRLSEDNDFLSRYRVFVEYVETASLDRRPDHELGFVVPDKQYFAETRRFVEIPEFLLNQTFLRSVSRYETLGRAKSFLRQLNSTRDPSEQLIYFSYESRHLGTPDNSSSHHRLLIVVPGNATNGVPDKWVQFGIPDPGARARVRNVSVVSAVAGGGGTFNAYFKDFYRTYRRDGSISIQGRWELGEGDDNCAQCHKSGILPIFPERGSVIEAEQQALLAVNERFLTYGSPRFGRYLDGRKLGPGLSSASLDDRRQRFGARFAETPAAKAMVCSSCHNSQRLGALNWPMDKILISSYVNGGQMPMGHQLKISDRHDLYAKLIQEYFATDKNNPGILKSWLLGKLQ

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