NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364928_0081663

Scaffold Ga0364928_0081663


Overview

Basic Information
Taxon OID3300033813 Open in IMG/M
Scaffold IDGa0364928_0081663 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 30_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023545Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0364928_0081663_58_642F023545GGAMTYYRGSGFCDADYRVGLAALGLDPAETERLTALPPIVRYDTLLERGWLSRYFEALQAAVAERAVGLRGELRRLHPELRFAFHATEVPADWFSLGLLRGFSTRDAPALLWLRERGGRGGHRGHGGHTRGLLRNYRERQIYVLSAVGLEPDRATFAPGEVARLRSVVFGENHGFWLTGGGTATDSLGRMIRRFAR
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