Scaffold Ga0314862_0019647

Overview

Basic Information

• Taxon OID: 3300033803
• Scaffold ID: Ga0314862_0019647
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1307
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Peru: Loreto
• Coordinates
  • Lat. (^o): -6.3272
  • Long. (^o): -74.8136
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067487	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314862_0019647_1_378	F067487	GGCGG	MRAVFEVRPPAWAETLAILQSVSLPDGPEAVRARVVNVEGERVTIDFPALDGETSAEQLLAACVAGEWADRGDVESCRLVEVEWPQGLPGPAFPAPPGVSVGAIVKPALGLAPVEAAAIAAELAAG