Scaffold Ga0371489_0059612

Overview

Basic Information

• Taxon OID: 3300033755
• Scaffold ID: Ga0371489_0059612
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2462
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: McLean, Ithaca, New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F005112	Metagenome / Metatranscriptome	411	Y
F047437	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0371489_0059612_2054_2311	F047437	AGGA	MLYNEVAKKVQAYSHESRIPIDTLKAKLPALCAIERLANPQASVHQNRLGLTLGVVIASLLGSIGAGALIGLGAGMAHWIAHLFA
Ga0371489_0059612_271_666	F005112	AGGAG	MSLVAKYKLFWAACIAALCSLAFWKNSKSHPRKSRLWRLGKSAVDTGLVLLMVLHAPALLLMYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLLTGQVVARMDKRERNKLAKAA
Ga0371489_0059612_962_1234	F002761	N/A	MVWAGLGKLNELARFVGFKRAKPRESALRWINSHKVIALTTTEVVNYSVHGISSPLGVTFALGGTIVNTLMVTFVVPIWCRLSRLESRLS