Scaffold Ga0314858_102554

Overview

Basic Information

• Taxon OID: 3300033742
• Scaffold ID: Ga0314858_102554
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 726
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2943
  • Long. (^o): -156.7153
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005817	Metagenome / Metatranscriptome	389	N
F090428	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314858_102554_1_147	F090428	N/A	MSKKLITDELINERLEAKGFGEKQINDETTQESVLKHFNVELTDSYGAS
Ga0314858_102554_519_725	F005817	N/A	RGLEDNKLRYPAMISDLEFLLSQQFYYNDLTVNQVLNIFVFSDMEYLDRKNFDWRYGEDVFNVENNVA