Scaffold Ga0314858_061540

Overview

Basic Information

• Taxon OID: 3300033742
• Scaffold ID: Ga0314858_061540
• Source Dataset Name: Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 923
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.2943
  • Long. (^o): -156.7153
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006528	Metagenome / Metatranscriptome	371	Y
F008385	Metagenome	334	Y
F030249	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314858_061540_141_323	F008385	N/A	MNKTNIYGDYKVCIKCSDPADVIEGTKNYCVECWYKHVNGKSFKEVEKLIKEEERFIKKK
Ga0314858_061540_363_533	F006528	N/A	MTDKEKLLTDIELEKLKIATFKNIIEGSRSINGVTWNRIKNYKRKEQIQCLKQLSQ
Ga0314858_061540_505_690	F030249	AGGCGG	MTRNKYGLPLIFDYVKLTDDRRLKSLEKMKYNCPKGWKELWSKKLNQLRKNIHDRQRKTL