NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314858_001428

Scaffold Ga0314858_001428


Overview

Basic Information
Taxon OID3300033742 Open in IMG/M
Scaffold IDGa0314858_001428 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3539
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.2943Long. (o)-156.7153Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028038Metagenome / Metatranscriptome193Y
F029926Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0314858_001428_1903_2367F029926GAGMRIDQVVKPNSKVMSKLAQDAIDKITLDASKGKFQNGKSGYGYKNDTYKKYKANSMQGKNGKLKAFKGQSTDTTTSFVNMRLTGRTLRGMRGSGTTNTAIITYDRGEIVLGNEKRGYDIYDLSNKNKEFIAERFGKELLDRNIKKYVSKTTIIK
Ga0314858_001428_2364_3056F028038AGGALANLDFYNKEIANIQGQLLDKLDNLVAGLGNITDTELMQIAKQIDFFAEMETLGFGKLMNRVGKTFDDQIAVVFGELSKRELGKVSAASIDTLRELKNFEMTYLTNGVRQYADQLKTAMLRGIITGETNTQIMAGLQTGFGVGTFISSSEASFLINDVFARFSNTSRAKAFKEFPDIKFQYIGPSGGNIRPACVKALQEPPLTREEINSLGYVDFGGRGGYNCRHDWVRV
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