NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314858_001398

Scaffold Ga0314858_001398


Overview

Basic Information
Taxon OID3300033742 Open in IMG/M
Scaffold IDGa0314858_001398 Open in IMG/M
Source Dataset NameSea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3560
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.2943Long. (o)-156.7153Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025613Metagenome201Y
F063168Metagenome130Y
F069354Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0314858_001398_1735_1965F069354N/AMKEFNLNRLMQSCCITIDTAYYNELFDYLIEGGIDLNTLNIDDLVVNGVQFLEKDDCFKEEDYYILTETGDGCWVI
Ga0314858_001398_1993_2196F063168N/AMDTHVQNDPNNPINYNSKERFCEVCNIEENKTYFVEDSQICEECFFSCCGDELNQDIRICPTCKEHN
Ga0314858_001398_2459_2686F025613N/AMNNYKITNLRSNKDYFLNEEEKTNFFTKNKLQNYSITNLTEQKRKRINKILTNVQLVCFFALTVLLTVYIIENNY
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