Scaffold Ga0314858_000073

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314858_000073

Scaffold Ga0314858_000073

Overview

Basic Information
Taxon OID	3300033742 Open in IMG/M
Scaffold ID	Ga0314858_000073 Open in IMG/M
Source Dataset Name	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9282
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (90.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.2943	Long. (^o)	-156.7153	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016204	Metagenome	249	Y
F032048	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314858_000073_7476_7664	F032048	AGGAGG	MSNIHTEQTLEQIHEQVLEDDAKLLLTEEIDEICYLYNLHPDDDRDEILGFIAESIYYNQHN
Ga0314858_000073_7788_7970	F016204	AGGAGG	MMSKEQYVNVLDIKFYVCDEDGNEVLNKDGTIKEFDFKGRLKGLEYLCEDMTVEDLEEIT

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