Scaffold Ga0316617_100722138

Overview

Basic Information

• Taxon OID: 3300033557
• Scaffold ID: Ga0316617_100722138
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 944
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3776
  • Long. (^o): -82.5117
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001807	Metagenome / Metatranscriptome	631	Y
F020342	Metagenome / Metatranscriptome	224	Y
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316617_1007221381	F103180	N/A	MIGFSIEFKRWYFVIRGPRGRVYLATGFAKRMPVITLTGAYMLDQCIGKWSGDETDEELLQQLKDIR
Ga0316617_1007221382	F001807	N/A	MTVLAIEHTSFTDTHVTVTAVVDEMRLLYRASHYEPEEWAPALCQATIELDPEEPIPLDEDGFCSYLDQLDPHWQLVDNSDYDLES
Ga0316617_1007221383	F020342	N/A	MSAYVDQLTMFDRINLAACAQRRATQNLLDSNRWNGEYNTARLWMKYRLIKTTTYSYIED
Ga0316617_1007221384	F001120	N/A	TKRSLISFDRTIHGVNITEHGIKSYTKAIKLGPFQLTLNANPNGVKGSLSIPGTGVSIPNIKLI