Scaffold Ga0316617_100446734

Overview

Basic Information

• Taxon OID: 3300033557
• Scaffold ID: Ga0316617_100446734
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1157
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3776
  • Long. (^o): -82.5117
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032248	Metagenome	180	Y
F059903	Metagenome	133	Y
F062697	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316617_1004467343	F062697	GAGG	MNITHIPTPNGRTIPRGSLTVISLWDILDYMELREEEVQAIADYGLSNVSYGDSLFTLIGNNFALDCIVNGLLDYYDELQMDTDEYGQPSRSLPARLYTRKDIEEMFWAVVGEDDYIDLETM
Ga0316617_1004467344	F032248	GGAG	MRLCFKCKCVIPNERLDVLPDTQTCVSCSGVEKYVGAMIFDHKTAGRLEYVNPKNKQAVDTLKRFVNRARN
Ga0316617_1004467345	F059903	GAGG	MQQNFIDVVKLLESPSSRSPWYVVEGSKGKHYVSALGGRAAKGLREGTELKLYRNVGKQMSAYVLTR