Scaffold Ga0247829_10026440

Overview

Basic Information

• Taxon OID: 3300033550
• Scaffold ID: Ga0247829_10026440
• Source Dataset Name: Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3796
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.673
  • Long. (^o): -77.032
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010704	Metagenome / Metatranscriptome	300	Y
F022970	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247829_100264402	F010704	GAG	MRRFLVIAAAGMALLVAGQASATIRPGRGMSGVVLGMTKAQVQAKLGRPIGTGGGRYYYARVWVGFRLGRVVEVTTTRSSERTGSGVGVDSSEAQVRRAFPSVVCGPSGGFRRCRVGSGNPGTRATDFLLGRGKVLQVSVVLLPG
Ga0247829_100264403	F022970	AGG	MRIEVHPEAREELLEFLRRANCITRVEDDGSVTVEVPDAIGEEQARLEVELYVKAWQASHPDVEAHLIQ