Scaffold Ga0314758_1035583

Overview

Basic Information

• Taxon OID: 3300033525
• Scaffold ID: Ga0314758_1035583
• Source Dataset Name: Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_28AUG2017_LR1 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1377
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Amabiliviricetes → Wolframvirales → Narnaviridae → unclassified Narnaviridae → Diplodia seriata splipalmivirus 1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 42.3941
  • Long. (^o): -85.3741

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042104	Metatranscriptome	158	N
F042105	Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0314758_10355831	F042105	GGAG	LDGAPDPVDPGSKSYDKRRREMAHFVGMDFLFTQREYCQSLQTDDTGTRVLVNSTKNGDILSVRPVPKHLDKVWFTKKLRFPRQYLGISRMDDRCKKLSYMVHLLTRHGFQTRAILKSVYRLSLTWMFSRYEDMRKHVSSITRKIIVRNGPTRSPWVSRKDLPQYPYFYGEKRHENGIEAPLWSRSLPRKKGDVASETTQLV
Ga0314758_10355832	F042104	AGGAG	MADQGQQQQQAAQRGGGNARRGVGRNAASGAPTTVFLNPERAPPLISKWQKLLGKDLSRIEVVYTADGVTVNLYAKEGTPFEDLGTGAFSVADYKAKKEEAVKPSTEDAKFAFRNKFEVRLNQAFPEGIDLGDGSDTALRSAVMALPFEQRRVMLMSNKQFKSAYPNGFAGAAGAAA