Basic Information | |
---|---|
Taxon OID | 3300033513 Open in IMG/M |
Scaffold ID | Ga0316628_100138925 Open in IMG/M |
Source Dataset Name | Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2820 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 41.3769 | Long. (o) | -82.5097 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013805 | Metagenome | 268 | Y |
F033384 | Metagenome | 177 | Y |
F053407 | Metagenome / Metatranscriptome | 141 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0316628_1001389251 | F013805 | N/A | PVLGFLHITRVHGPLDPVIAEYRIVFAPLGGRLHNRHAQCQGLDALTDFLRQAGVPLPEIEQAWQNLAKRRIYSVPRVALTHAQIEALGL |
Ga0316628_1001389252 | F033384 | AGGAG | MGVYAEVRDFVLAHRACAGPRQANAGVPTVAGYRLLVVCGCGAEFKRWVTLDDADENLLKSALLAFDN |
Ga0316628_1001389255 | F053407 | GGAG | LTYLDMSQIDATALFWANSVLWIALWAVFIARLAWLDLQLRAHLAAHHPHRWRRLSWSERLTWSAWFVFQSKEDYGDPAIGARRREMLTVFYDMLLVLAAMIVWVVVSAAMVQLGPKW |
⦗Top⦘ |