Scaffold Ga0316628_100001036

Overview

Basic Information

• Taxon OID: 3300033513
• Scaffold ID: Ga0316628_100001036
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18979
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3769
  • Long. (^o): -82.5097
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065909	Metagenome / Metatranscriptome	127	Y
F103182	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316628_10000103614	F065909	N/A	MVVARHSIENCPGGVVRPDKEFIKKTEESIKKAGVKLLDGYMDAPGHVFYFVLETDDNPALNIAVEPLRLIGEVAITPIMNFFKEGREWGKKIGIQE
Ga0316628_10000103622	F103182	GGA	MDVREETKDHTEMTKEEVFKDYGNILSGVKRSKIKTRRPRKKLKQCAKCGRVGDEMTKHSLTGEHKPPFIGLCRQPCHDEVHKFGIKMTQEEKAALKRQPPCSIQFPAENNIVNPYKKLIEPESLYAQKFKQSFKRINSENKET