Scaffold Ga0316630_10187319

Overview

Basic Information

• Taxon OID: 3300033487
• Scaffold ID: Ga0316630_10187319
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1506
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfacyla → Candidatus Desulfacyla euxinica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3776
  • Long. (^o): -82.5117
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039197	Metagenome	164	Y
F067248	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316630_101873191	F039197	GGA	MKSITTLQRKASPVVKGAWVALGIPFDVPTIDEKVEGIIDLEALIMTTLLLMEKDRVATDLPAWLIRFSSLINHQKLKTMFHLMPSRHRSVILEKLIRTPFCSAPKAIRNIFNLGPASDALLKTVQMRMSKLNTLENISQTSIMIRERLQYGTGFRADLIALTHVKGFGMRGTHLAKLLCTNDSTVSRILGDLRACRFLDQDNERIGPVEPYPGMFISSQSWWNLCEIIDAAKFSSQESKGAAVENLNFRHDGF
Ga0316630_101873192	F067248	N/A	MQFHGIYVANLQREIVRVPDEMPKPLKGNEIVENLRLLADWLRVKYPGEHFEFIVAGGAAMTLEGFKGQTTDIDLLSPEVLPDSIKKGIAHVGRAKRLGAEWLNTSLANMLSIAVGSVKLPKYFRQVSRTLEVSDNLKIGLIGRQALISLKTYATTPSYRKHTVDLSNLQPSRKEITEAVRFVMSVDDSDPRKDDLRLVMKELGFDFDEIHHNLAKKSKPRR