Scaffold Ga0316620_10148470

Overview

Basic Information

• Taxon OID: 3300033480
• Scaffold ID: Ga0316620_10148470
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1876
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3776
  • Long. (^o): -82.5117
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045183	Metagenome / Metatranscriptome	153	N
F060094	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316620_101484702	F060094	AGGA	MRKGRYANMNIRMVIAVPLQSCSFNLRRLIVLILAAVLLLSCTSPQTADGPVYRSERGFTIGLTPQWLVVHRLDIGGKENPIGTDNLRIRSLFTADVLSGLKEKALTNGVELFVNLETSDESLIESINIQAARGSIAIEESDVAPACAETEKRLTTLYGQPVKMSACKVLQLRRMPSVYLEYGVERPALAHAQYLIQLKPDHYIVMTLTCRPANLPHLRQELDAIVASFRPT
Ga0316620_101484703	F045183	GGAGG	MKLKDTRNRWINRLLHPALRDSEIIKTLSGLPGVRPFLYEFKLGPLFLISAWLLLFHANYSGAAEDWILYFFGGFTVVGVLSVHKAVMRFLYRIAQFDKPVEGQDRTIMITAETVTLLGFLMAAMIFLNEFQSTGFGM