Basic Information | |
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Taxon OID | 3300033433 Open in IMG/M |
Scaffold ID | Ga0326726_10298840 Open in IMG/M |
Source Dataset Name | Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1510 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New York | |||||||
Coordinates | Lat. (o) | 42.3286 | Long. (o) | -76.4792 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F034230 | Metagenome / Metatranscriptome | 175 | Y |
F045836 | Metagenome / Metatranscriptome | 152 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0326726_102988402 | F034230 | GGAGG | MRWAFSIMLVLCLALPAWGAETGPETNRLTVKVGPFFIQENDKKMNLEGPGPHVIRPGKRINITVTVVNGGKEKSEPVKLKYVESGGKAGEPRFYRVQAIEPGKTWQRTFIARHDESGKKSVSVSLVTLEDKPLADAKGSPRPDTSHTASINLIVKER |
Ga0326726_102988404 | F045836 | AGGAG | MESPNVFAALGYYIVSSFLDPVQWLICGICGWKMERIEQAMIAGAAMVGILYIILVSVYSAEKLFSFPSPHVGFTILGKAIGAAIMSALIFWLKQKQLSRKRS |
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