Scaffold Ga0326726_10004477

Overview

Basic Information

• Taxon OID: 3300033433
• Scaffold ID: Ga0326726_10004477
• Source Dataset Name: Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12741
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.3286
  • Long. (^o): -76.4792
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014062	Metagenome / Metatranscriptome	266	Y
F027639	Metagenome	194	Y
F063944	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326726_100044773	F014062	GGAG	MAAVRQEGTYLGTTLAGFTATTAGIYGGGTWGALIAVLGAGLLLYSAVGFYRCKGVA
Ga0326726_100044776	F027639	AGGAG	MTDYAMVLQHNLAENCSATALRPSPAIPPEAMAFFHEGLKHFQGGDPGAALAAFSGSVLRAPEFGEAHIFLGLANALTSNIYPAFDHLERAAELQPESFAAHFTLAQLNFKLRIPQKGYEAARAALRCARTLEQRAILTQLLKEERAREQNGIARPWFNKRFSTPALVMAGSGLAAALVALIVHVR
Ga0326726_100044779	F063944	AGGAGG	MKLKSLAIIMLLVLGCGAAFAQGSYSFGFLSSSGVNEYCNYEAFTTGGHGNFYLQGYDVLTACPYSPVPGAAINGFAINVPISAFAPIHGKGFVYSDQIYDAYYGSWTQLQWTVLTKSAPTALRFGNYAWAGYVGFFGYEFLGNFGFLTTTLPGQANSKPTLKTTINTTAIHNLRTSHHPQK