NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0316625_100483660

Scaffold Ga0316625_100483660


Overview

Basic Information
Taxon OID3300033418 Open in IMG/M
Scaffold IDGa0316625_100483660 Open in IMG/M
Source Dataset NameWetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)970
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Microbial Communities From Old Woman Creek Delta, Ohio, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)41.3792Long. (o)-82.512Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014201Metagenome / Metatranscriptome265Y
F054981Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0316625_1004836601F014201N/AATWSAAARLTQAGSAQWQPWSSVTPDGTLVVGYYDRSYGNCESTGCNDITVTRVTGADSASPQFRRTRMTTSSMPNLTPANNPLEAGFLGDYMWVATDITGKAYVVWSDTRGLGGTIEEDIYFGTQK
Ga0316625_1004836602F054981N/AVIALARIALRLLADLADLVVPSATPLSRHRIGERHGVRARSVLGGLHHEYALVPALA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.