NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214471_10000112

Scaffold Ga0214471_10000112


Overview

Basic Information
Taxon OID3300033417 Open in IMG/M
Scaffold IDGa0214471_10000112 Open in IMG/M
Source Dataset NameSoil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81219
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (73.12%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)42.9888Long. (o)-108.3994Alt. (m)Depth (m)155
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011177Metagenome / Metatranscriptome294Y
F019623Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0214471_1000011213F019623N/AMAGWGDDPTLENLRTLIQEDGWTPVRVIETPEKDTVIVEKDGEQRTLESDHIAFHRYIEGLQEDFDL
Ga0214471_1000011262F011177AGGGGGMAETRILRPAEFAERLGVRTRVVIEAMYEQRVPRVRLDDGTLGIPEDALDSFELPAS

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