Scaffold Ga0310810_10227238

Overview

Basic Information

• Taxon OID: 3300033412
• Scaffold ID: Ga0310810_10227238
• Source Dataset Name: Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2078
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013455	Metagenome	271	Y
F069065	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310810_102272381	F069065	AGGAG	VNIGGLWNRISSAFERSDIGMPDTAHDDEHADLVRPTTTRYAPIRKAVERRVTTFLREDLVSHLEIGFNELFVLHYIEIAAEGQGAADLDHFLEEFSPQARVQWVKKLLGPAVGKHVSLDQFLGLDKEFPAEALAETDPFEDKLNQAAVALYRVTLHGRWVSAAAVHRAVEDSMQTE
Ga0310810_102272382	F013455	GAG	MSPQRVETFRAPWPAVLVEMKDFVNLWLLARGKREHATILRVFISKSLVSQAQLQPHVRDFRKSISRIPNCRVELKATGEAAHKIEIEYKEMPR