Scaffold Ga0310810_10042125

Overview

Basic Information

• Taxon OID: 3300033412
• Scaffold ID: Ga0310810_10042125
• Source Dataset Name: Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5574
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013697	Metagenome	269	Y
F035954	Metagenome / Metatranscriptome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310810_100421254	F035954	AGG	MYYIVLTIPVAQYDLFLEKIHPSSRAYEILVNGCFDQDSTEDCVQRKIQVLCSKDEAVMLLHIAEELFPRIIPKISRDWLAI
Ga0310810_100421257	F013697	GAG	MDRLDDEDIGFIWARHYPKRAGQASSMSLCVTLAMIIKQRAKSLHQYNGWASKLEHALAAAHVPKDQFDTLESESPENNS