Scaffold Ga0316605_10340932

Overview

Basic Information

• Taxon OID: 3300033408
• Scaffold ID: Ga0316605_10340932
• Source Dataset Name: Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1331
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfacyla → Candidatus Desulfacyla euxinica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Soil Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 41.3777
  • Long. (^o): -82.5117
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039197	Metagenome	164	Y
F067248	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316605_103409321	F039197	GGA	MKSIAALQRKASLAVKAAWVALGIPFDVSTIDEKVEGIIDVEALIMTSLVLMEQDRMATDLPAWLSRFSSLVNHQKLKTMFNTMPGQHRSGILEKVNQSPFRVAPKSIRNIFSLEPASDAFFKTVQMRVHKLNTIENVAQASIMIRNRLQYGTGFRADIIALTHVKGFGMKGTQFARLLCTNDSTVSRILGDLRACRFLDQDNERIGPVEPYPGMFISSQS
Ga0316605_103409322	F067248	GGCGG	MTLEGFKGQTTDIDLISPKELPDSLKKGIAHVGTAKRLGAEWLNTNLANMLSTSARSVKLPKYFGEISRTLEVNDNLKIGLISRQALICLKLYATTPSYRKHTVDLSNLRPSKREITEALRFVMSIDDSDPRKDDLRIVMKDLGFDFDEIHRSLAKKGKPRR