Scaffold Ga0316605_10024914

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316605_10024914

Scaffold Ga0316605_10024914

Overview

Basic Information
Taxon OID	3300033408 Open in IMG/M
Scaffold ID	Ga0316605_10024914 Open in IMG/M
Source Dataset Name	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3890
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Wetland Soil Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	41.3777	Long. (^o)	-82.5117	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043479	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316605_100249142	F043479	AGGAGG	MRSMTKLMLATAAALWLLPGAAGADDATSTVKIKSWKADPVELLDQPDGKVVATKPAAELPTEALRTGQGWLKVKVGGKDYYVEASQARTDLKLSGKPKCDTLPGATGHAASRGLGDEGCVP

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