Scaffold Ga0326727_10000034

Overview

Basic Information

• Taxon OID: 3300033405
• Scaffold ID: Ga0326727_10000034
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 551711
• Total Scaffold Genes: 462
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 357 (77.27%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001158	Metagenome / Metatranscriptome	763	Y
F003428	Metagenome / Metatranscriptome	487	Y
F004508	Metagenome / Metatranscriptome	435	Y
F009127	Metagenome / Metatranscriptome	322	Y
F010107	Metagenome / Metatranscriptome	308	Y
F010489	Metagenome / Metatranscriptome	303	Y
F012603	Metagenome / Metatranscriptome	279	Y
F016697	Metagenome	245	Y
F033530	Metagenome / Metatranscriptome	177	Y
F055095	Metagenome	139	Y
F068890	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326727_1000003424	F001158	AGGGGG	MEALSVVLYQNDPGTAHSLAVGLSQHFESVYLARNPEDVRPVLAKHRAEALVLDLETSGPDEVERLHRDFPSLCIVGTHRLADDKLWAEAMSLGASDICEPRNDDIVRSLLHRFAPQAVA
Ga0326727_10000034266	F010107	GGA	MEEYSSVMDKKEINSPKLTEHFLFWVCGLALLLMAALFAHFVYHIF
Ga0326727_10000034279	F004508	AGGAGG	MRGMFAGIILFMFVIMLGAFSAAENEMGIADHYRVSFIQKVRVADTLLPQGNYEIRHVMEGSNHIMVFRQLGTKKPVEVRAKCTLVPLGAKADRDQTVYILNAANERVLQELVFKGDRAKHVF
Ga0326727_10000034288	F012603	N/A	MFLFLDPSPVLAQTLLPHEMLRETIAGNNSDAASTFIMASPVSLPDSPSTRSLKVVDKKFIITMATLAGAETLRLTTHQLVLVHEFAAGAPWVTSVPSNPRLVGKYAGIYAAELLVAYELKKSHSWLPGDRIVRKVWWAYPAAMVPIHIKNGVRSIRTQAPSCPPQECPSQ
Ga0326727_10000034323	F068890	AGGAG	MVACILAFEVKVEKKEELVKVLKDQVLPILKQQVGFLEILPFFHKKVTEEKVFTITLWTTRRDAERYEGEFHPKVLDILTPCLTTPVEVSYSNLETALCDRFVDALAV
Ga0326727_10000034335	F009127	GGA	MFLLRSTREEVYNILWILVFGFATINILSLGARRFEREKQGLSFGEILAIMVVLVSIVLLGWEMLYLFHILPIRITPV
Ga0326727_10000034344	F003428	N/A	MAESECTIYRKLKERETRAHAAWTSFLYRNEVKPKLSEKAKRKHQKEEMEEYQQAHKARLAHAKICPACSK
Ga0326727_10000034369	F055095	AGGCGG	MRRFIGALVGAIVICTLCVAQGKGSVRGNVFREESMGLTYEFPEKFSPKVDENNKLFGHDTTGRERMILTLWDPPQRGGALRMAFLYDTKQRSSDKTHDTVALAYIGEIKGMWLGVKDVKIVGPTKVPEPSYDYWRLDFSTPNQVPRYNSAIAITLSDRRILVVRAGAPSQSELDSEVDSLVHLRFDKSQK
Ga0326727_10000034399	F033530	GAGG	MKTLQISLIASLIGSAAGLGAWIFGLGGIIWPGHPQMASFLLTLVTTIVIQIAWPRLMETNSR
Ga0326727_10000034424	F016697	N/A	MEIALKANSRWHRIATIALLCALSWTRPWISAAQSFETARVGPGNVGPGNVIVQSQFGGQIFGFDIDQNGTEGVLSESQDLGGGKVLAAVETFDQTTGKILNVVQKLETKDDFLTLGISGGSVGLVEHEEVKGIYVSKRVYEELNPLDSNQFTGTWTPPLAKDDILFGLSRNQASTTTAAFGFENGGDNHTFVFGSNVGANTFESVITLTNPAFYFAVTPVMAYDSKTNQAVVATSTGAVGGPPPVFALANLTTGAVAYFNGLPGPPPYRAGFVNGIAVDSDDGIACTTTELDFSVEFYNLKKKTGFAVVLPGATSQIQSGSDVEYDPVHKLFLVAQSVSSTGPGSSIQVYDTKGNLVESLNGFNFSNAFNVVFTHIALHPSTRSGYVDGPDSGVTEIQSFTY
Ga0326727_1000003446	F010489	GGAGG	MKGTILLLLVLSGGLQLSAQTVVQQFAAVSSGAGVVSDMDLPDPTAEGSVLIAMPELLTPDVKVLSVTDNAPAGGNTYKQVSGAVSSCAKAPIDIWYCERCNPGVTELKFHLSGHVRASINSFLEVSNLALPAALDGSGAQISDGKVTSSGLEVGPSIKTTATDFVIAAYSSINPRPTGVTPVAWTFKPTYVYQLNAAPGTYQPTLTGSKAGGNFCISIAAFKTKPAPVAH