NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10340188

Scaffold Ga0326728_10340188


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10340188 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1331
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002761Metagenome / Metatranscriptome531Y
F015428Metagenome254Y
F047437Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_103401881F047437N/AAVVAASEAAQGHEANGLPPGSREFKTLFNEVATKVQEYATESGDPLDTLKARLPALCALERLANPAPSVPGNKAGLTLGILIAGLLGPIGIGALIGLGTGMAHWISHLFG
Ga0326728_103401882F015428AGGAGGMTGILELFALVEIGSGIGFLATWRNRLLTSKVNYFHPSHNKKSPFDKLVRAQTGPVITRHDQLCVKVADGLTVLVRRLVLLDAFRQFMRAVFLSNSPLRRSLRAKKKVSHG
Ga0326728_103401884F002761AGGAGGMTFTPSATSSFSAGAVFWGMVWATLGKLNELVHFVGFKKSNPRQAVLRWINAHKVVTITLNYSVHGISSPLGVTFALGGTLVNAFMVTFIVPIWCRLSNLERR
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